Example for a BED file for a Synthetic Hypervariation project (mm10 version):

browser position chr3:34635280-34768011

track name="mSox2" visibility=3

chr3 34635330 34766459 131kbp_possible_assembly

chr3 34757649 34759187 Zhou2014_PutativeEnhancer107

chr3 34761022 34762537 Zhou2014_PutativeEnhancer111

chr3 34645732 34646646 Zhou2014_PutativeEnhancer1

chr3 34653595 34654542 Zhou2014_PutativeEnhancer2

chr3 34668128 34669292 Zhou2014_PutativeEnhancer18

chr3 34734272 34735768 Zhou2014_PutativeEnhancer85

chr3 34744496 34746034 Zhou2014_PutativeEnhancer95

chr3 34756156 34757185 Zhou2014_PutativeEnhancer106

chr3 34759599 34761035 Zhou2014_PutativeEnhancer109

Example for a BED file for a Synthetic Haplotype project:

Same as above, but elements would include mainly known disease-associated variants